Molecular principles of the spontaneous mutagenesis in DNA
Електронний науковий архів Науково-технічної бібліотеки Національного університету "Львівська політехніка"
Переглянути архів ІнформаціяПоле | Співвідношення | |
Title |
Molecular principles of the spontaneous mutagenesis in DNA
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Creator |
Brovarets, Ol’ha
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Contributor |
National Academy of Sciences of Ukraine
Taras Shevchenko National University of Kyiv |
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Subject |
spontaneous point mutagenesis
incorporation and replication errors tautomerisation pairs of nucleotide bases enzymatically-competent conformation hydrogen bond quantum chemistry |
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Description |
Reported results are crucial for understanding of the microstructural mechanisms of the spontaneous transitions and transversions, since they allow us to explain, from the one side, the origin of the mutagenic tautomers at the separation of the DNA strands before its replication and, from the other side, in what way occurs the adaptation of the incorrect purine·pyrimidine, purine·purine and pyrimidine·pyrimidine wobble pairs to the enzymatically competent sizes in the recognition pocket of the high-fidelity DNA-polymerase.
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Date |
2018-04-04T12:44:44Z
2018-04-04T12:44:44Z 2016 |
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Type |
Conference Abstract
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Identifier |
Brovarets O. Molecular principles of the spontaneous mutagenesis in DNA / Ol’ha Brovarets // Litteris et Artibus : proceedings of the 6th International youth science forum, November 24–26, 2016, Lviv, Ukraine / Lviv Polytechnic National University. – Lviv : Lviv Polytechnic Publishing House, 2016. – P. 23–30. – Bibliography: 69 titles.
http://ena.lp.edu.ua:8080/handle/ntb/40240 |
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Language |
en
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Relation |
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Oxford: Oxford University Press, 1990. [41] Atkins, P.W. Physical chemistry. Oxford: Oxford University Press, 1998. [42]Brovarets', O.O. Microstructural mechanisms of the origin of the spontaneous point mutations. DrSci Thesis: Taras Shevchenko National University of Kyiv, Kyiv, Ukraine, 2015. [43] Brovarets’, O.O., & Hovorun, D.M. Can tautomerisation of the A∙T Watson-Crick base pair via double proton transfer provoke point mutations during DNA replication? A comprehensive QM and QTAIM analysis. J. Biomol. Struct. & Dynam., 2014, 32, 127-154. [44] Brovarets’, O.O., & Hovorun, D.M. Why the tautomerization of the G·C Watson–Crick base pair via the DPT does not cause point mutations during DNA replication? QM and QTAIM comprehensive analysis. J. Biomol. Struct. & Dynam., 2014, 32, 1474-1499. [45]Brovarets' O.O., Hovorun D.M. Proton tunneling in the A∙T Watson-Crick DNA base pair: myth or reality? J. Biomol. Struct. & Dynam., 2015, 33, 12, 2716-2720. [46] Brovarets', O.O., Zhurakivsky, R.O., & Hovorun, D.M. DPT tautomerisation of the wobble guanine·thymine DNA base mispair is not mutagenic: QM and QTAIM arguments. J. Biomol. Struct. & Dynam., 2015, 33, 674-689. [47] Brovarets’ O.O., Yurenko Ye.P., Dubey I.Ya., & Hovorun D.M. Can DNA-binding proteins of replisome tautomerize nucleotide bases? Ab initio model study. J. Biomol. Struct. & Dynam., 2012, 29, 1101–1109. [48]Brovarets' O.O., Zhurakivsky R.O., & Hovorun D.M. Is the DPT tautomerisation of the long A·G Watson-Crick DNA base mispair a source of the adenine and guanine mutagenic tautomers? A QM and QTAIM response to the biologically important question. J. Comput. Chem., 2014, 35, 451-466. [49]Brovarets' O.O., & Hovorun D.M. The physicochemical essence of the purine·pyrimidine transition mismatches with Watson-Crick geometry in DNA: A·C* versa A*·C. A QM and QTAIM atomistic understanding. J. Biomol. Struct. & Dynam., 2015, 33, 28-55. [50]Brovarets' O.O., & Hovorun D.M. The nature of the transition mismatches with Watson-Crick architecture: the G*·T or G·T* DNA base mispair or both? A QM/QTAIM perspective for the biological problem. J. Biomol. Struct. & Dynam., 2015, 33, 925-945. [51]Brovarets' O.O., & Hovorun D.M. Atomistic understanding of the C·T mismatched DNA base pair tautomerization via the DPT: QM and QTAIM computational approaches. J. Comput. Chem., 2013, 34, 2577-2590. [52]Brovarets' O.O., & Hovorun D.M. Does the G·G*syn DNA mismatch containing canonical and rare tautomers of the guanine tautomerise through the DPT? A QM/QTAIM microstructural study. Mol. Phys., 2014, 112, 3033-3046. [53] Brovarets' O.O., Zhurakivsky R.O., & Hovorun D.M. Does the tautomeric status of the adenine bases change upon the dissociation of the А*·Аsyn Topal-Fresco DNA mismatch? A combined QM and QTAIM atomistic insight. Phys. Chem. Chem. Phys., 2014, 16, 3715-3725. [54]Brovarets' O.O., & Hovorun D.M. DPT tautomerisation of the G·Asyn and A*·G*syn DNA mismatches: a QM/QTAIM combined atomistic investigation. Phys. Chem. Chem. Phys., 2014, 16, 9074-9085. [55]Brovarets' O.O., Zhurakivsky R.O., & Hovorun D.M. Structural, energetic and tautomeric properties of the T·T*/T*·T DNA mismatch involving mutagenic tautomer of thymine: a QM and QTAIM insight. Chem. Phys. Lett., 2014, 592, 247-255. [56]Brovarets' O.O., & Hovorun D.M. Atomistic nature of the DPT tautomerisation of the biologically important C·C* DNA base mispair containing amino and imino tautomers of cytosine: а QM and QTAIM approach. Phys. Chem. Chem. Phys., 2013, 15, 20091-20104. [57]Brovarets' O.O., & Hovorun D.M. DPT tautomerization of the long A·A* Watson-Crick base pair formed by the amino and imino tautomers of adenine: combined QM and QTAIM investigation. J. Mol. Model., 2013, 19, 4223-4237. [58]Brovarets' O.O., & Hovorun D.M. How does the long G·G* Watson-Crick DNA base mispair comprising keto and enol tautomers of the guanine tautomerise? The results of а QM/QTAIM investigation. Phys. Chem. Chem. Phys., 2014, 16, 15886-15899. [59]Brovarets' O.O., & Hovorun D.M. New structural hypostases of the A·T and G·C Watson-Crick DNA base pairs caused by their mutagenic tautomerisation in a wobble manner: a QM/QTAIM prediction. RSС Adv., 2015, 5, 99594-99605. [60] Brovarets’, O.O., & Hovorun, D.M. Physicochemical mechanism of the wobble DNA base pairs Gua·Thy and Ade·Cyt transition into the mismatched base pairs Gua*·Thy and Ade·Cyt* formed by the mutagenic tautomers. Ukr. Bioorg. Acta, 2009, 8, 12-18. [61]Brovarets' O.O., & Hovorun D.M. Tautomeric transition between wobble А·С DNA base mispair and Watson-Crick-like A·C* mismatch: miscrostructural mechanism and biological significance. Phys. Chem. Chem. Phys., 2015, 17, 15103-15110. [62]Brovarets' O.O., & Hovorun D.M. How many tautomerisation pathways connect Watson-Crick-like G*·T DNA base mispair and wobble mismatches? J. Biomol. Struct. & Dynam., 2015, 33, 2297-2315. [63] Brovarets’, O.O., & Hovorun, D. M. Wobble↔Watson-Crick tautomeric transitions in the homo-purine DNA mismatches: a key to the intimate mechanisms of the spontaneous transversions. J. Biomol. Struct. & Dynam., 2015, 33, 2710-2715. [64] Brovarets’, O.O., & Hovorun, D.M. Novel physico-chemical mechanism of the mutagenic tautomerisation of the Watson–Crick-like A·G and C·T DNA base mispairs: a quantum-chemical picture. RSC Adv., 2015, 5, 66318-66333. [65]Brovarets', O.O., & Hovorun, D.M. A novel conception for spontaneous transversions caused by homo-pyrimidine DNA mismatches: a QM/QTAIM highlight. Phys. Chem. Chem. Phys., 2015, 17, 21381-21388. [66] Brovarets’, O.O., Pérez-Sánchez, H.E., & Hovorun, D.M. Structural grounds for the 2-aminopurine mutagenicity: A novel insight into the old problem of the replication errors. RSС Adv., 2016, 6, 99546-99557. [67] Brovarets’, O.O., & Pérez-Sánchez, H.E. Whether 2-aminopurine induces incorporation errors at the DNA replication? A quantum-mechanical answer on the actual biological issue. J. Biomol. Struct. & Dynam., 2016, DOI: 10.1080/07391102.2016.1253504. [68] Brovarets’, O.O., & Pérez-Sánchez, H.E. Whether the amino-imino tautomerism of 2-aminopurine is involved into its mutagenicity? Results of a thorough QM investigation. RSС Adv., 2016, DOI: 10.1039/C6RA24277D. [69]Huang, M.M., Arnheim, N., & Goodman, M.F. Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR. Nucleic Acids Res., 1992, 20, 4567-4573.
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23-30
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Coverage |
UA
Lviv |
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Publisher |
Lviv Polytechnic Publishing House
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